- promoted, relegated, Cup Qualifier See Rank Key
|Rk||Squad||MP||W||D||L||GF||GA||GDiff||Pts||Attendance||Top Team Scorer||Goalkeeper||Notes|
|1||Portsmouth||46||26||9||11||79||40||+39||87||16,823||Kal Naismith - 13||David Forde||Promoted|
|2||Plymouth Argyle||46||26||9||11||71||46||+25||87||9,652||Graham Carey - 14||Luke McCormick||Promoted|
|3||Doncaster||46||25||10||11||85||55||+30||85||6,021||John Marquis - 26||Marko Maroši||Promoted|
|4||Luton Town||46||20||17||9||70||43||+27||77||8,046||Danny Hylton - 21||Christian Walton||→ Semi-finals|
|5||Exeter City||46||21||8||17||75||56||+19||71||4,166||David Wheeler - 17||Christy Pym||→ Semi-finals|
|6||Carlisle United||46||18||17||11||69||68||+1||71||5,114||Charlie Wyke - 14||Mark Gillespie||→ Semi-finals|
|7||Blackpool||46||18||16||12||69||46||+23||70||3,456||Kyle Vassell - 11||Sam Slocombe||Promoted, → Semi-finals|
|8||Colchester Utd||46||19||12||15||67||57||+10||69||3,973||Chris Porter - 16||Sam Walker|
|9||Wycombe||46||19||12||15||58||53||+5||69||3,917||Adebayo Akinfenwa - 12||Jamal Blackman|
|10||Stevenage||46||20||7||19||67||63||+4||67||2,899||Matthew Godden - 20||Jamie Jones|
|11||Cambridge Utd||46||19||9||18||58||50||+8||66||4,737||Luke Berry - 17||Will Norris|
|12||Mansfield Town||46||17||15||14||54||50||+4||66||3,774||Matt Green - 10||Scott Shearer|
|13||Acc'ton Stanley||46||17||14||15||59||56||+3||65||1,699||Billy Kee - 13||Marek Rodák|
|14||Grimsby Town||46||17||11||18||59||63||-4||62||5,259||Omar Bogle - 19||James McKeown|
|15||Barnet||46||14||15||17||57||64||-7||57||2,260||John Akinde - 26||Josh Vickers|
|16||Notts County||46||16||8||22||54||76||-22||56||5,970||Jon Stead - 14||Adam Collin|
|17||Crewe Alexandra||46||14||13||19||58||67||-9||55||3,882||Chris Dagnall - 14||Ben Garratt|
|18||Morecambe||46||14||10||22||53||73||-20||52||1,704||Paul Mullin, Kevin Ellison - 8||Barry Roche|
|19||Crawley Town||46||13||12||21||53||71||-18||51||2,492||James Collins - 20||Glenn Morris|
|20||Yeovil Town||46||11||17||18||49||64||-15||50||3,567||François Zoko - 9||Artur Krysiak|
|21||Cheltenham||46||12||14||20||49||69||-20||50||3,323||Billy Waters - 12||Russell Griffiths|
|22||Newport County||46||12||12||22||51||73||-22||48||2,861||Sean Rigg, Rhys Healey - 6||Joe Day|
|23||Hartlepool Utd||46||11||13||22||54||75||-21||46||3,788||Pádraig Amond - 14||Trevor Carson||Relegated|
|24||Leyton Orient||46||10||6||30||47||87||-40||36||4,663||Paul McCallum, Gavin Massey - 8||Alex Cisak||Relegated|
Squad Standard Stats 2016-2017 League Two
Squad Goalkeeping 2016-2017 League Two
Squad Shooting 2016-2017 League Two
Squad Playing Time 2016-2017 League Two
Squad Miscellaneous Stats 2016-2017 League Two
Nationalities 2016-2017 League Two
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